Samples | Pf7 | Pf54 | Pf87 | Pf237 | Pf289 | Pf297 |
---|---|---|---|---|---|---|
Sequencing and mapping | ||||||
 Number of clean reads | 101 315 479 | 140 050 984 | 248 893 994 | 78 515 613 | 80 809 032 | 94 593 018 |
 Mapped on P. falciparum | 5 430 602 | 6 342 044 | 10 150 675 | 21 265 252 | 10 626 161 | 5 929 181 |
 Mapped (%) | 5.36 | 4.53 | 4.08 | 27.08 | 13.15 | 6.27 |
 Mean mapping quality | 47.37 | 46.59 | 46.07 | 53.2 | 51.98 | 48.88 |
Coverage | ||||||
 Coverage fold | 20.57 | 22.76 | 35.50 | 121.78 | 54.68 | 23.98 |
 Genome covered > 1 (%) | 96.43 | 96.05 | 96.96 | 98.61 | 98.04 | 96.10 |
Variation | ||||||
 Raw SNP | 53 314 | 50 032 | 58 753 | 83 456 | 70 415 | 53 730 |
 Filtered SNP | 11 838 | 10 928 | 606 | 15 410 | 14 361 | 1230 |
 Filtered Indel | 15 657 | 11 474 | 3094 | 32 402 | 27 814 | 8953 |