Parasite | Gene target | GenBank Accession # | Reference | Primer / probe | Sequence (5′ → 3′) | Product size (bp) | Final concentration (nmol/L) |
---|---|---|---|---|---|---|---|
Blastocystis spp. | SSU rRNA | AY244621 | [41] | Forward primer | GGTCCGGTGAACACTTTGGATTT | 119 | 350 |
Reverse primer | CCTACGGAAACCTTGTTACGACTTCA | Â | 350 | ||||
Probe | FAM-TCGTGTAAATCTTACCATTTAGAGGA-MGBNFQ | Â | 120 | ||||
Entamoeba histolytica | SSU rRNA | X75434.1 | Forward primer | AACAGTAATAGTTTCTTTGGTTAGTAAAA | 135 | 200 | |
Reverse primer | CTTAGAATGTCATTTCTCAATTCAT | Â | 200 | ||||
Probe | ROX-ATTAGTACAAAATGGCCAATTCATTCA-IBRQ | Â | 80 | ||||
Giardia duodenalis | SSU rRNA | M54878.1 | [30] | Forward primer | GACGGCTCAGGACAACGGTT | 63 | 200 |
Reverse primer | TTGCCAGCGGTGTCCG | Â | 200 | ||||
Probe | CY5-CCCGCGGCGGTCCCTGCTAG-IBRQ | Â | 100 | ||||
Cryptosporidium spp. | COWP | AF248743.1 | [30] | Forward primer | CAAATTGATACCGTTTGTCCTTCTG | 150 | 300 |
Reverse primer | GGCATGTCGATTCTAATTCAGCT | Â | 300 | ||||
Probe | HEX-TGCCATACATTGTTGTCCTGACAAATTGAAT-IBFQ | Â | 75 |